HL_7O7Y_037
3D structure
- PDB id
- 7O7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- G(5MU)(PSU)CG(1MA)UCC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU, 1MA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7O7Y_037 not in the Motif Atlas
- Homologous match to HL_1B23_003
- Geometric discrepancy: 0.1105
- The information below is about HL_1B23_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 96
Unit IDs
7O7Y|1|AT|G|53
7O7Y|1|AT|5MU|54
7O7Y|1|AT|PSU|55
7O7Y|1|AT|C|56
7O7Y|1|AT|G|57
7O7Y|1|AT|1MA|58
7O7Y|1|AT|U|59
7O7Y|1|AT|C|60
7O7Y|1|AT|C|61
Current chains
- Chain AT
- P-site Phe-tRNA(Phe)
Nearby chains
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
- Chain BJ
- Ribosomal protein L11
- Chain Bo
- eL42
Coloring options: