HL_7O7Y_042

3D structure

PDB id

7O7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

7O7Y|1|B5|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Y_042 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.374

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

7O7Y|1|B5|U|204
7O7Y|1|B5|C|205
7O7Y|1|B5|U|206
7O7Y|1|B5|G|207
7O7Y|1|B5|A|208
7O7Y|1|B5|U|209
7O7Y|1|B5|C|210
7O7Y|1|B5|G|211

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BY

Ribosomal protein L26

Chain Be

eL32