HL_7O7Y_046
3D structure
- PDB id
- 7O7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GGUAAACUCC
- Length
- 10 nucleotides
- Bulged bases
- 7O7Y|1|B5|G|315, 7O7Y|1|B5|U|316
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7O7Y_046 not in the Motif Atlas
- Homologous match to HL_8C3A_009
- Geometric discrepancy: 0.1522
- The information below is about HL_8C3A_009
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_15076.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
7O7Y|1|B5|G|314
7O7Y|1|B5|G|315
7O7Y|1|B5|U|316
7O7Y|1|B5|A|317
7O7Y|1|B5|A|318
7O7Y|1|B5|A|319
7O7Y|1|B5|C|320
7O7Y|1|B5|U|321
7O7Y|1|B5|C|322
7O7Y|1|B5|C|323
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BN
- Ribosomal protein L15
- Chain Ba
- 60S ribosomal protein L27a
- Chain Bi
- 60S ribosomal protein L36
- Chain Bo
- eL42
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