HL_7O7Y_053
3D structure
- PDB id
- 7O7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- C(OMG)UCUUG(1MA)AAC(A2M)CG
- Length
- 14 nucleotides
- Bulged bases
- 7O7Y|1|B5|C|1269
- QA status
- Modified nucleotides: OMG, 1MA, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7O7Y_053 not in the Motif Atlas
- Geometric match to HL_4WF9_011
- Geometric discrepancy: 0.1428
- The information below is about HL_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.7
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 22
Unit IDs
7O7Y|1|B5|C|1259
7O7Y|1|B5|OMG|1260
7O7Y|1|B5|U|1261
7O7Y|1|B5|C|1262
7O7Y|1|B5|U|1263
7O7Y|1|B5|U|1264
7O7Y|1|B5|G|1265
7O7Y|1|B5|1MA|1266
7O7Y|1|B5|A|1267
7O7Y|1|B5|A|1268
7O7Y|1|B5|C|1269
7O7Y|1|B5|A2M|1270
7O7Y|1|B5|C|1271
7O7Y|1|B5|G|1272
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BB
- Ribosomal protein L3
- Chain BC
- 60S ribosomal protein L4
- Chain Ba
- 60S ribosomal protein L27a
- Chain Be
- eL32
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