HL_7O7Y_057

3D structure

PDB id

7O7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCGCG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Y_057 not in the Motif Atlas

Geometric match to HL_4V88_192

Geometric discrepancy: 0.1617

The information below is about HL_4V88_192

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

7O7Y|1|B5|C|1435
7O7Y|1|B5|C|1436
7O7Y|1|B5|G|1437
7O7Y|1|B5|C|1438
7O7Y|1|B5|G|1439

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BL

Ribosomal protein eL13

Chain Bi

60S ribosomal protein L36