HL_7O7Y_062

3D structure

PDB id

7O7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGAAACG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Y_062 not in the Motif Atlas

Geometric match to HL_4WSM_210

Geometric discrepancy: 0.3734

The information below is about HL_4WSM_210

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61907.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

7O7Y|1|B5|C|1702
7O7Y|1|B5|G|1703
7O7Y|1|B5|A|1704
7O7Y|1|B5|A|1705
7O7Y|1|B5|A|1706
7O7Y|1|B5|C|1707
7O7Y|1|B5|G|1708

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Ao

40S ribosomal protein uS19

Chain Ar

40S ribosomal protein S18