HL_7O7Y_088

3D structure

PDB id

7O7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

7O7Y|1|B5|C|3405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Y_088 not in the Motif Atlas

Homologous match to HL_8C3A_047

Geometric discrepancy: 0.3773

The information below is about HL_8C3A_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7O7Y|1|B5|C|3400
7O7Y|1|B5|G|3401
7O7Y|1|B5|C|3402
7O7Y|1|B5|G|3403
7O7Y|1|B5|G|3404
7O7Y|1|B5|C|3405
7O7Y|1|B5|G|3406

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BA

Ribosomal protein uL2

Chain BG

Ribosomal protein eL8

Chain BN

Ribosomal protein L15