HL_7O7Y_094
3D structure
- PDB id
- 7O7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CUG(OMG)GGCGG
- Length
- 9 nucleotides
- Bulged bases
- 7O7Y|1|B5|G|3941
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7O7Y_094 not in the Motif Atlas
- Homologous match to HL_5TBW_054
- Geometric discrepancy: 0.1216
- The information below is about HL_5TBW_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47383.2
- Basepair signature
- cWW-F-F-cWW-F-F
- Number of instances in this motif group
- 11
Unit IDs
7O7Y|1|B5|C|3939
7O7Y|1|B5|U|3940
7O7Y|1|B5|G|3941
7O7Y|1|B5|OMG|3942
7O7Y|1|B5|G|3943
7O7Y|1|B5|G|3944
7O7Y|1|B5|C|3945
7O7Y|1|B5|G|3946
7O7Y|1|B5|G|3947
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain AT
- Transfer RNA; tRNA
- Chain BI
- 60S ribosomal protein L10
- Chain Bb
- 60S ribosomal protein L29
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