HL_7O7Y_096

3D structure

PDB id

7O7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Y_096 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.1653

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7O7Y|1|B5|G|3996
7O7Y|1|B5|A|3997
7O7Y|1|B5|C|3998
7O7Y|1|B5|A|3999
7O7Y|1|B5|G|4000
7O7Y|1|B5|A|4001
7O7Y|1|B5|A|4002
7O7Y|1|B5|A|4003
7O7Y|1|B5|C|4004

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BJ

Ribosomal protein L11