HL_7O7Y_108

3D structure

PDB id

7O7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGGAAAGGGG

Length

10 nucleotides

Bulged bases

7O7Y|1|B5|A|4649, 7O7Y|1|B5|A|4650, 7O7Y|1|B5|G|4653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Y_108 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2404

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.3

Basepair signature

cWW-F

Number of instances in this motif group

5

Unit IDs

7O7Y|1|B5|C|4645
7O7Y|1|B5|G|4646
7O7Y|1|B5|G|4647
7O7Y|1|B5|A|4648
7O7Y|1|B5|A|4649
7O7Y|1|B5|A|4650
7O7Y|1|B5|G|4651
7O7Y|1|B5|G|4652
7O7Y|1|B5|G|4653
7O7Y|1|B5|G|4654

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BO

Ribosomal protein uL13