HL_7O7Z_002

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGGCCGGUACAG

Length

12 nucleotides

Bulged bases

7O7Z|1|A2|C|73, 7O7Z|1|A2|U|76

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Z_002 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3184

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

7O7Z|1|A2|C|69
7O7Z|1|A2|G|70
7O7Z|1|A2|G|71
7O7Z|1|A2|C|72
7O7Z|1|A2|C|73
7O7Z|1|A2|G|74
7O7Z|1|A2|G|75
7O7Z|1|A2|U|76
7O7Z|1|A2|A|77
7O7Z|1|A2|C|78
7O7Z|1|A2|A|79
7O7Z|1|A2|G|80

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Af

40S ribosomal protein S6

Chain BW

eL24