HL_7O7Z_006

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CCUCCGUG

Length

8 nucleotides

Bulged bases

7O7Z|1|A2|U|329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O7Z|1|A2|C|323
7O7Z|1|A2|C|324
7O7Z|1|A2|U|325
7O7Z|1|A2|C|326
7O7Z|1|A2|C|327
7O7Z|1|A2|G|328
7O7Z|1|A2|U|329
7O7Z|1|A2|G|330

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Af

40S ribosomal protein S6

Chain BW

eL24