HL_7O7Z_013

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

ACU(PSU)UAA(A2M)UCCUU

Length

13 nucleotides

Bulged bases

7O7Z|1|A2|U|574

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Z_013 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.2219

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7O7Z|1|A2|A|570
7O7Z|1|A2|C|571
7O7Z|1|A2|U|572
7O7Z|1|A2|PSU|573
7O7Z|1|A2|U|574
7O7Z|1|A2|A|575
7O7Z|1|A2|A|576
7O7Z|1|A2|A2M|577
7O7Z|1|A2|U|578
7O7Z|1|A2|C|579
7O7Z|1|A2|C|580
7O7Z|1|A2|U|581
7O7Z|1|A2|U|582

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ai

Ribosomal protein S9 (Predicted)

Chain Ax

40S ribosomal protein S24