HL_7O7Z_029

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Z_029 not in the Motif Atlas

Homologous match to HL_4V88_217

Geometric discrepancy: 0.3476

The information below is about HL_4V88_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

7O7Z|1|A2|C|1461
7O7Z|1|A2|G|1462
7O7Z|1|A2|U|1463
7O7Z|1|A2|U|1464
7O7Z|1|A2|C|1465
7O7Z|1|A2|A|1466
7O7Z|1|A2|G|1467

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AF

RACK1

Chain Aq

40S ribosomal protein eS17