HL_7O7Z_031

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAUUGCAAUUAU(PSU)C

Length

14 nucleotides

Bulged bases

7O7Z|1|A2|A|1624

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O7Z|1|A2|G|1614
7O7Z|1|A2|A|1615
7O7Z|1|A2|U|1616
7O7Z|1|A2|U|1617
7O7Z|1|A2|G|1618
7O7Z|1|A2|C|1619
7O7Z|1|A2|A|1620
7O7Z|1|A2|A|1621
7O7Z|1|A2|U|1622
7O7Z|1|A2|U|1623
7O7Z|1|A2|A|1624
7O7Z|1|A2|U|1625
7O7Z|1|A2|PSU|1626
7O7Z|1|A2|C|1627

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AG

uS14

Chain Ao

40S ribosomal protein uS19

Chain Ar

40S ribosomal protein S18

Chain As

Ribosomal protein eS19