HL_7O7Z_032

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUCAUAAGC

Length

9 nucleotides

Bulged bases

7O7Z|1|A2|G|1666

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Z_032 not in the Motif Atlas

Homologous match to HL_4V88_220

Geometric discrepancy: 0.3019

The information below is about HL_4V88_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7O7Z|1|A2|G|1659
7O7Z|1|A2|U|1660
7O7Z|1|A2|C|1661
7O7Z|1|A2|A|1662
7O7Z|1|A2|U|1663
7O7Z|1|A2|A|1664
7O7Z|1|A2|A|1665
7O7Z|1|A2|G|1666
7O7Z|1|A2|C|1667

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AG

uS14

Chain Ap

uS9

Chain As

Ribosomal protein eS19

Chain At

40S ribosomal protein uS10