HL_7O7Z_035

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUGCAGCCCGUC

Length

12 nucleotides

Bulged bases

7O7Z|1|AH|G|3486, 7O7Z|1|AH|C|3487

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O7Z|1|AH|G|3484
7O7Z|1|AH|U|3485
7O7Z|1|AH|G|3486
7O7Z|1|AH|C|3487
7O7Z|1|AH|A|3488
7O7Z|1|AH|G|3489
7O7Z|1|AH|C|3490
7O7Z|1|AH|C|3491
7O7Z|1|AH|C|3492
7O7Z|1|AH|G|3493
7O7Z|1|AH|U|3494
7O7Z|1|AH|C|3495

Current chains

Chain AH

mRNA containing SARS-CoV-2 sequence

Nearby chains

Chain Ac

40S ribosomal protein S3

Chain Aj

eS10