HL_7O7Z_038
3D structure
- PDB id
- 7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GA(OMC)U(OMG)AA(YYG)A(PSU)C
- Length
- 11 nucleotides
- Bulged bases
- 7O7Z|1|AT|A|38
- QA status
- Modified nucleotides: OMC, OMG, YYG, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7O7Z_038 not in the Motif Atlas
- Homologous match to HL_1FIR_002
- Geometric discrepancy: 0.1921
- The information below is about HL_1FIR_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7O7Z|1|AT|G|30
7O7Z|1|AT|A|31
7O7Z|1|AT|OMC|32
7O7Z|1|AT|U|33
7O7Z|1|AT|OMG|34
7O7Z|1|AT|A|35
7O7Z|1|AT|A|36
7O7Z|1|AT|YYG|37
7O7Z|1|AT|A|38
7O7Z|1|AT|PSU|39
7O7Z|1|AT|C|40
Current chains
- Chain AT
- P-site Phe-tRNA(Phe)
Nearby chains
- Chain A2
- Small subunit ribosomal RNA; SSU rRNA
- Chain AH
- Coronavirus frameshifting stimulation element
- Chain AI
- E-site tRNA
- Chain Ao
- 40S ribosomal protein uS19
- Chain Ap
- uS9
- Chain Ar
- 40S ribosomal protein S18
- Chain Ay
- 40S ribosomal protein S25
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