HL_7O7Z_042

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Z_042 not in the Motif Atlas

Homologous match to HL_8C3A_003

Geometric discrepancy: 0.0673

The information below is about HL_8C3A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

7O7Z|1|B5|C|89
7O7Z|1|B5|G|90
7O7Z|1|B5|G|91
7O7Z|1|B5|C|92
7O7Z|1|B5|G|93
7O7Z|1|B5|A|94
7O7Z|1|B5|G|95

Current chains

Chain B5

28S rRNA

Nearby chains

Chain AI

E-site tRNA

Chain BL

Ribosomal protein eL13

Chain BQ

Ribosomal Protein eL18

Chain Ba

60S ribosomal protein L27a

Chain Bo

eL42