HL_7O7Z_051

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUCCGC

Length

6 nucleotides

Bulged bases

7O7Z|1|B5|C|775

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Z_051 not in the Motif Atlas

Geometric match to HL_5Y85_004

Geometric discrepancy: 0.1081

The information below is about HL_5Y85_004

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

7O7Z|1|B5|G|773
7O7Z|1|B5|U|774
7O7Z|1|B5|C|775
7O7Z|1|B5|C|776
7O7Z|1|B5|G|777
7O7Z|1|B5|C|778

Current chains

Chain B5

28S rRNA

Nearby chains