HL_7O7Z_054

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUCCCC

Length

6 nucleotides

Bulged bases

7O7Z|1|B5|U|1070, 7O7Z|1|B5|C|1071, 7O7Z|1|B5|C|1073

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Z_054 not in the Motif Atlas

Geometric match to HL_4OOG_001

Geometric discrepancy: 0.3803

The information below is about HL_4OOG_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_56334.1

Basepair signature

cWW-F

Number of instances in this motif group

16

Unit IDs

7O7Z|1|B5|G|1069
7O7Z|1|B5|U|1070
7O7Z|1|B5|C|1071
7O7Z|1|B5|C|1072
7O7Z|1|B5|C|1073
7O7Z|1|B5|C|1074

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B7

5S ribosomal RNA; 5S rRNA

Chain BD

Ribosomal_L18_c domain-containing protein

Chain BI

60S ribosomal protein L10