HL_7O7Z_055

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

C(OMG)UCUUG(1MA)AAC(A2M)CG

Length

14 nucleotides

Bulged bases

7O7Z|1|B5|C|1269

QA status

Modified nucleotides: OMG, 1MA, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Z_055 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.1521

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

7O7Z|1|B5|C|1259
7O7Z|1|B5|OMG|1260
7O7Z|1|B5|U|1261
7O7Z|1|B5|C|1262
7O7Z|1|B5|U|1263
7O7Z|1|B5|U|1264
7O7Z|1|B5|G|1265
7O7Z|1|B5|1MA|1266
7O7Z|1|B5|A|1267
7O7Z|1|B5|A|1268
7O7Z|1|B5|C|1269
7O7Z|1|B5|A2M|1270
7O7Z|1|B5|C|1271
7O7Z|1|B5|G|1272

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain Ba

60S ribosomal protein L27a

Chain Be

eL32