HL_7O7Z_056
3D structure
- PDB id
- 7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CUCGCACGAAAG
- Length
- 12 nucleotides
- Bulged bases
- 7O7Z|1|B5|C|1309, 7O7Z|1|B5|A|1315
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7O7Z_056 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.2002
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13963.3
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
7O7Z|1|B5|C|1307
7O7Z|1|B5|U|1308
7O7Z|1|B5|C|1309
7O7Z|1|B5|G|1310
7O7Z|1|B5|C|1311
7O7Z|1|B5|A|1312
7O7Z|1|B5|C|1313
7O7Z|1|B5|G|1314
7O7Z|1|B5|A|1315
7O7Z|1|B5|A|1316
7O7Z|1|B5|A|1317
7O7Z|1|B5|G|1318
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BC
- 60S ribosomal protein L4
- Chain BL
- Ribosomal protein eL13
- Chain BN
- Ribosomal protein L15
- Chain BY
- Ribosomal protein L26
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