HL_7O7Z_066

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

7O7Z|1|B5|G|1808

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Z_066 not in the Motif Atlas

Homologous match to HL_8C3A_025

Geometric discrepancy: 0.0776

The information below is about HL_8C3A_025

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7O7Z|1|B5|G|1803
7O7Z|1|B5|G|1804
7O7Z|1|B5|U|1805
7O7Z|1|B5|A|1806
7O7Z|1|B5|A|1807
7O7Z|1|B5|G|1808
7O7Z|1|B5|C|1809

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BI

60S ribosomal protein L10