HL_7O7Z_073
3D structure
- PDB id
- 7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- AG(OMC)A(OMG)UU
- Length
- 7 nucleotides
- Bulged bases
- 7O7Z|1|B5|G|2264, 7O7Z|1|B5|A|2266, 7O7Z|1|B5|U|2268
- QA status
- Modified nucleotides: OMC, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7O7Z_073 not in the Motif Atlas
- Homologous match to HL_5TBW_032
- Geometric discrepancy: 0.1987
- The information below is about HL_5TBW_032
- Detailed Annotation
- Pseudoknot geometry with 3' bulge
- Broad Annotation
- No text annotation
- Motif group
- HL_40756.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
7O7Z|1|B5|A|2263
7O7Z|1|B5|G|2264
7O7Z|1|B5|OMC|2265
7O7Z|1|B5|A|2266
7O7Z|1|B5|OMG|2267
7O7Z|1|B5|U|2268
7O7Z|1|B5|U|2269
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BK
- Replicase polyprotein 1ab
- Chain BP
- uL22
- Chain BR
- 60S ribosomal protein L19
- Chain Bl
- eL39
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