HL_7O7Z_074

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGAGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Z_074 not in the Motif Atlas

Homologous match to HL_5TBW_033

Geometric discrepancy: 0.1523

The information below is about HL_5TBW_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7O7Z|1|B5|C|2301
7O7Z|1|B5|G|2302
7O7Z|1|B5|A|2303
7O7Z|1|B5|G|2304
7O7Z|1|B5|C|2305
7O7Z|1|B5|G|2306

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BN

Ribosomal protein L15

Chain Bj

Ribosomal protein L37