HL_7O7Z_077

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

7O7Z|1|B5|U|2373, 7O7Z|1|B5|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Z_077 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.1018

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7O7Z|1|B5|G|2366
7O7Z|1|B5|U|2367
7O7Z|1|B5|U|2368
7O7Z|1|B5|C|2369
7O7Z|1|B5|A|2370
7O7Z|1|B5|G|2371
7O7Z|1|B5|A|2372
7O7Z|1|B5|U|2373
7O7Z|1|B5|C|2374
7O7Z|1|B5|C|2375

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BR

60S ribosomal protein L19

Chain BX

uL23

Chain Bg

60S ribosomal protein L34