HL_7O7Z_091

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GA(A2M)GAAAU(PSU)C

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Z_091 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.2751

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7O7Z|1|B5|G|3454
7O7Z|1|B5|A|3455
7O7Z|1|B5|A2M|3456
7O7Z|1|B5|G|3457
7O7Z|1|B5|A|3458
7O7Z|1|B5|A|3459
7O7Z|1|B5|A|3460
7O7Z|1|B5|U|3461
7O7Z|1|B5|PSU|3462
7O7Z|1|B5|C|3463

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bi

60S ribosomal protein L36

Chain Bo

eL42

Chain Bv

Ribosomal protein uL1