HL_7O7Z_096

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

7O7Z|1|B5|G|3941

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Z_096 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.1274

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

7O7Z|1|B5|C|3939
7O7Z|1|B5|U|3940
7O7Z|1|B5|G|3941
7O7Z|1|B5|OMG|3942
7O7Z|1|B5|G|3943
7O7Z|1|B5|G|3944
7O7Z|1|B5|C|3945
7O7Z|1|B5|G|3946
7O7Z|1|B5|G|3947

Current chains

Chain B5

28S rRNA

Nearby chains

Chain AT

Transfer RNA; tRNA

Chain BI

60S ribosomal protein L10

Chain Bb

60S ribosomal protein L29