HL_7O7Z_099

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAGAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Z_099 not in the Motif Atlas

Homologous match to HL_5TBW_057

Geometric discrepancy: 0.0957

The information below is about HL_5TBW_057

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

7O7Z|1|B5|C|4016
7O7Z|1|B5|A|4017
7O7Z|1|B5|G|4018
7O7Z|1|B5|A|4019
7O7Z|1|B5|A|4020
7O7Z|1|B5|G|4021
7O7Z|1|B5|G|4022
7O7Z|1|B5|G|4023

Current chains

Chain B5

28S rRNA

Nearby chains

Chain AT

Transfer RNA; tRNA

Chain BI

60S ribosomal protein L10

Chain BT

eL21

Chain Bo

eL42