HL_7O7Z_101

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Z_101 not in the Motif Atlas

Homologous match to HL_5TBW_059

Geometric discrepancy: 0.0809

The information below is about HL_5TBW_059

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7O7Z|1|B5|U|4067
7O7Z|1|B5|G|4068
7O7Z|1|B5|A|4069
7O7Z|1|B5|A|4070
7O7Z|1|B5|A|4071
7O7Z|1|B5|G|4072

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BD

Ribosomal_L18_c domain-containing protein

Chain BT

eL21

Chain Bo

eL42