HL_7O7Z_109

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

C(PSU)GAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

7O7Z|1|B5|G|4440, 7O7Z|1|B5|C|4444

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Z_109 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.1763

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7O7Z|1|B5|C|4434
7O7Z|1|B5|PSU|4435
7O7Z|1|B5|G|4436
7O7Z|1|B5|A|4437
7O7Z|1|B5|A|4438
7O7Z|1|B5|C|4439
7O7Z|1|B5|G|4440
7O7Z|1|B5|C|4441
7O7Z|1|B5|C|4442
7O7Z|1|B5|U|4443
7O7Z|1|B5|C|4444
7O7Z|1|B5|U|4445
7O7Z|1|B5|A|4446
7O7Z|1|B5|A|4447
7O7Z|1|B5|G|4448

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BH

60S ribosomal protein L9

Chain BO

Ribosomal protein uL13

Chain Bm

60S ribosomal protein L40