HL_7O7Z_111

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

7O7Z|1|B5|U|4715

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Z_111 not in the Motif Atlas

Geometric match to HL_5J7L_201

Geometric discrepancy: 0.1156

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7O7Z|1|B5|G|4714
7O7Z|1|B5|U|4715
7O7Z|1|B5|A|4716
7O7Z|1|B5|G|4717
7O7Z|1|B5|A|4718
7O7Z|1|B5|C|4719
7O7Z|1|B5|G|4720
7O7Z|1|B5|A|4721
7O7Z|1|B5|C|4722

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BP

uL22