HL_7O81_002

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGCCGGUACAG

Length

12 nucleotides

Bulged bases

7O81|1|A2|C|73, 7O81|1|A2|U|76

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O81_002 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3611

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

7O81|1|A2|C|69
7O81|1|A2|G|70
7O81|1|A2|G|71
7O81|1|A2|C|72
7O81|1|A2|C|73
7O81|1|A2|G|74
7O81|1|A2|G|75
7O81|1|A2|U|76
7O81|1|A2|A|77
7O81|1|A2|C|78
7O81|1|A2|A|79
7O81|1|A2|G|80

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Af

40S ribosomal protein S6

Chain BW

eL24