HL_7O81_004

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUCGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O81_004 not in the Motif Atlas

Geometric match to HL_3RG5_007

Geometric discrepancy: 0.1647

The information below is about HL_3RG5_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7O81|1|A2|U|197
7O81|1|A2|U|198
7O81|1|A2|C|199
7O81|1|A2|G|200
7O81|1|A2|C|201
7O81|1|A2|G|202

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ah

40S ribosomal protein S8