3D structure

PDB id
7O81 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CGAAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7O81_019 not in the Motif Atlas
Homologous match to HL_4V88_207
Geometric discrepancy: 0.1302
The information below is about HL_4V88_207
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

7O81|1|A2|C|995
7O81|1|A2|G|996
7O81|1|A2|A|997
7O81|1|A2|A|998
7O81|1|A2|A|999
7O81|1|A2|G|1000

Current chains

Chain A2
18S rRNA

Nearby chains

Chain AE
Ribosomal protein eS26
Chain Am
uS15

Coloring options:


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