HL_7O81_023

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGCAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O81_023 not in the Motif Atlas

Geometric match to HL_4LFB_020

Geometric discrepancy: 0.0963

The information below is about HL_4LFB_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7O81|1|A2|U|1179
7O81|1|A2|G|1180
7O81|1|A2|C|1181
7O81|1|A2|A|1182
7O81|1|A2|A|1183
7O81|1|A2|A|1184

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Az

60s ribosomal protein l41

Chain B5

Large subunit ribosomal RNA; LSU rRNA

Chain Bp

eL43