3D structure

PDB id
7O81 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GAUUGCAAUUAU(PSU)C
Length
14 nucleotides
Bulged bases
7O81|1|A2|U|1622, 7O81|1|A2|U|1623, 7O81|1|A2|A|1624
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7O81|1|A2|G|1614
7O81|1|A2|A|1615
7O81|1|A2|U|1616
7O81|1|A2|U|1617
7O81|1|A2|G|1618
7O81|1|A2|C|1619
7O81|1|A2|A|1620
7O81|1|A2|A|1621
7O81|1|A2|U|1622
7O81|1|A2|U|1623
7O81|1|A2|A|1624
7O81|1|A2|U|1625
7O81|1|A2|PSU|1626
7O81|1|A2|C|1627

Current chains

Chain A2
18S rRNA

Nearby chains

Chain AG
uS14
Chain Ao
40S ribosomal protein uS19
Chain Ar
40S ribosomal protein S18
Chain As
Ribosomal protein eS19

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.0922 s