HL_7O81_031

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUUGCAAUUAU(PSU)C

Length

14 nucleotides

Bulged bases

7O81|1|A2|U|1622, 7O81|1|A2|U|1623, 7O81|1|A2|A|1624

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O81|1|A2|G|1614
7O81|1|A2|A|1615
7O81|1|A2|U|1616
7O81|1|A2|U|1617
7O81|1|A2|G|1618
7O81|1|A2|C|1619
7O81|1|A2|A|1620
7O81|1|A2|A|1621
7O81|1|A2|U|1622
7O81|1|A2|U|1623
7O81|1|A2|A|1624
7O81|1|A2|U|1625
7O81|1|A2|PSU|1626
7O81|1|A2|C|1627

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AG

uS14

Chain Ao

40S ribosomal protein uS19

Chain Ar

40S ribosomal protein S18

Chain As

Ribosomal protein eS19