3D structure

PDB id
7O81 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CUAGGGGUAUG
Length
11 nucleotides
Bulged bases
7O81|1|AT|G|16, 7O81|1|AT|G|17, 7O81|1|AT|G|18, 7O81|1|AT|U|19
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7O81_038 not in the Motif Atlas
Homologous match to HL_5E6M_001
Geometric discrepancy: 0.4364
The information below is about HL_5E6M_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_99769.3
Basepair signature
cWW-cWW-F-F-F-F
Number of instances in this motif group
6

Unit IDs

7O81|1|AT|C|12
7O81|1|AT|U|13
7O81|1|AT|A|14
7O81|1|AT|G|15
7O81|1|AT|G|16
7O81|1|AT|G|17
7O81|1|AT|G|18
7O81|1|AT|U|19
7O81|1|AT|A|20
7O81|1|AT|U|21
7O81|1|AT|G|22

Current chains

Chain AT
P-site tRNA(Pro)

Nearby chains

Chain B5
Large subunit ribosomal RNA; LSU rRNA
Chain Bv
Ribosomal protein uL1

Coloring options:


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