HL_7O81_038
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUAGGGGUAUG
- Length
- 11 nucleotides
- Bulged bases
- 7O81|1|AT|G|16, 7O81|1|AT|G|17, 7O81|1|AT|G|18, 7O81|1|AT|U|19
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7O81_038 not in the Motif Atlas
- Homologous match to HL_5E6M_001
- Geometric discrepancy: 0.4364
- The information below is about HL_5E6M_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_99769.3
- Basepair signature
- cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
7O81|1|AT|C|12
7O81|1|AT|U|13
7O81|1|AT|A|14
7O81|1|AT|G|15
7O81|1|AT|G|16
7O81|1|AT|G|17
7O81|1|AT|G|18
7O81|1|AT|U|19
7O81|1|AT|A|20
7O81|1|AT|U|21
7O81|1|AT|G|22
Current chains
- Chain AT
- P-site tRNA(Pro)
Nearby chains
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Bv
- Ribosomal protein uL1
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