HL_7O81_044
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGCGGUG
- Length
- 7 nucleotides
- Bulged bases
- 7O81|1|B5|G|134, 7O81|1|B5|G|135, 7O81|1|B5|U|136
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7O81_044 not in the Motif Atlas
- Geometric match to HL_2ZNI_001
- Geometric discrepancy: 0.2078
- The information below is about HL_2ZNI_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.6
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 21
Unit IDs
7O81|1|B5|C|131
7O81|1|B5|G|132
7O81|1|B5|C|133
7O81|1|B5|G|134
7O81|1|B5|G|135
7O81|1|B5|U|136
7O81|1|B5|G|137
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BN
- Ribosomal protein L15
- Chain Bh
- uL29
- Chain Bj
- Ribosomal protein L37
Coloring options: