3D structure

PDB id
7O81 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GUCCGC
Length
6 nucleotides
Bulged bases
7O81|1|B5|C|775
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7O81_053 not in the Motif Atlas
Geometric match to HL_4LFB_009
Geometric discrepancy: 0.1237
The information below is about HL_4LFB_009
Detailed Annotation
UNCG
Broad Annotation
No text annotation
Motif group
HL_34617.5
Basepair signature
cWW-tSW-F
Number of instances in this motif group
57

Unit IDs

7O81|1|B5|G|773
7O81|1|B5|U|774
7O81|1|B5|C|775
7O81|1|B5|C|776
7O81|1|B5|G|777
7O81|1|B5|C|778

Current chains

Chain B5
28S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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