3D structure

PDB id
7O81 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CGAGACCUG
Length
9 nucleotides
Bulged bases
7O81|1|B5|C|867
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7O81|1|B5|C|862
7O81|1|B5|G|863
7O81|1|B5|A|864
7O81|1|B5|G|865
7O81|1|B5|A|866
7O81|1|B5|C|867
7O81|1|B5|C|868
7O81|1|B5|U|869
7O81|1|B5|G|870

Current chains

Chain B5
28S rRNA

Nearby chains

Chain BC
60S ribosomal protein L4
Chain BE
60S ribosomal protein L6
Chain BF
Ribosomal Protein uL30

Coloring options:

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