HL_7O81_054

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAGACCUG

Length

9 nucleotides

Bulged bases

7O81|1|B5|C|867

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O81_054 not in the Motif Atlas

Geometric match to HL_12CJ_003

Geometric discrepancy: 0.397

The information below is about HL_12CJ_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59138.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

7O81|1|B5|C|862
7O81|1|B5|G|863
7O81|1|B5|A|864
7O81|1|B5|G|865
7O81|1|B5|A|866
7O81|1|B5|C|867
7O81|1|B5|C|868
7O81|1|B5|U|869
7O81|1|B5|G|870

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BE

60S ribosomal protein L6

Chain BF

Ribosomal Protein uL30