HL_7O81_056

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCCCC

Length

6 nucleotides

Bulged bases

7O81|1|B5|U|1070, 7O81|1|B5|C|1071, 7O81|1|B5|C|1073

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O81_056 not in the Motif Atlas

Geometric match to HL_6AAX_001

Geometric discrepancy: 0.3348

The information below is about HL_6AAX_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_56334.1

Basepair signature

cWW-F

Number of instances in this motif group

16

Unit IDs

7O81|1|B5|G|1069
7O81|1|B5|U|1070
7O81|1|B5|C|1071
7O81|1|B5|C|1072
7O81|1|B5|C|1073
7O81|1|B5|C|1074

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B7

5S ribosomal RNA; 5S rRNA

Chain BD

Ribosomal_L18_c domain-containing protein

Chain BI

60S ribosomal protein L10