HL_7O81_062

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCGCG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O81_062 not in the Motif Atlas

Geometric match to HL_4L8H_001

Geometric discrepancy: 0.1912

The information below is about HL_4L8H_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

7O81|1|B5|C|1435
7O81|1|B5|C|1436
7O81|1|B5|G|1437
7O81|1|B5|C|1438
7O81|1|B5|G|1439

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BL

Ribosomal protein eL13

Chain Bi

60S ribosomal protein L36