HL_7O81_080

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

7O81|1|B5|U|2373, 7O81|1|B5|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O81_080 not in the Motif Atlas

Homologous match to HL_8C3A_035

Geometric discrepancy: 0.1291

The information below is about HL_8C3A_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7O81|1|B5|G|2366
7O81|1|B5|U|2367
7O81|1|B5|U|2368
7O81|1|B5|C|2369
7O81|1|B5|A|2370
7O81|1|B5|G|2371
7O81|1|B5|A|2372
7O81|1|B5|U|2373
7O81|1|B5|C|2374
7O81|1|B5|C|2375

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BR

60S ribosomal protein L19

Chain BX

uL23

Chain Bg

60S ribosomal protein L34