3D structure

PDB id
7O81 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CGCGGCG
Length
7 nucleotides
Bulged bases
7O81|1|B5|C|3405
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7O81_093 not in the Motif Atlas
Homologous match to HL_8C3A_047
Geometric discrepancy: 0.5857
The information below is about HL_8C3A_047
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

7O81|1|B5|C|3400
7O81|1|B5|G|3401
7O81|1|B5|C|3402
7O81|1|B5|G|3403
7O81|1|B5|G|3404
7O81|1|B5|C|3405
7O81|1|B5|G|3406

Current chains

Chain B5
28S rRNA

Nearby chains

Chain BA
Ribosomal protein uL2
Chain BG
Ribosomal protein eL8
Chain BN
Ribosomal protein L15

Coloring options:


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