HL_7O81_108

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

U(OMU)(OMG)(PSU)UCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, OMG, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O81_108 not in the Motif Atlas

Homologous match to HL_5TBW_063

Geometric discrepancy: 0.2852

The information below is about HL_5TBW_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7O81|1|B5|U|4243
7O81|1|B5|OMU|4244
7O81|1|B5|OMG|4245
7O81|1|B5|PSU|4246
7O81|1|B5|U|4247
7O81|1|B5|C|4248
7O81|1|B5|A|4249

Current chains

Chain B5

28S rRNA

Nearby chains

Chain AJ

Transfer RNA; tRNA

Chain BB

Ribosomal protein L3