HL_7O81_112
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- C(PSU)GAACGCCUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 7O81|1|B5|G|4440
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7O81_112 not in the Motif Atlas
- Homologous match to HL_8C3A_068
- Geometric discrepancy: 0.1754
- The information below is about HL_8C3A_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56677.9
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 7
Unit IDs
7O81|1|B5|C|4434
7O81|1|B5|PSU|4435
7O81|1|B5|G|4436
7O81|1|B5|A|4437
7O81|1|B5|A|4438
7O81|1|B5|C|4439
7O81|1|B5|G|4440
7O81|1|B5|C|4441
7O81|1|B5|C|4442
7O81|1|B5|U|4443
7O81|1|B5|C|4444
7O81|1|B5|U|4445
7O81|1|B5|A|4446
7O81|1|B5|A|4447
7O81|1|B5|G|4448
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BH
- 60S ribosomal protein L9
- Chain BO
- Ribosomal protein L13a
- Chain Bm
- 60S ribosomal protein L40
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