3D structure

PDB id
7O81 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
C(PSU)GAACGCCUCUAAG
Length
15 nucleotides
Bulged bases
7O81|1|B5|G|4440
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7O81_112 not in the Motif Atlas
Homologous match to HL_8C3A_068
Geometric discrepancy: 0.1754
The information below is about HL_8C3A_068
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_56677.9
Basepair signature
cWW-tWH-cWH-tSH-tHW-tHW-tSW
Number of instances in this motif group
7

Unit IDs

7O81|1|B5|C|4434
7O81|1|B5|PSU|4435
7O81|1|B5|G|4436
7O81|1|B5|A|4437
7O81|1|B5|A|4438
7O81|1|B5|C|4439
7O81|1|B5|G|4440
7O81|1|B5|C|4441
7O81|1|B5|C|4442
7O81|1|B5|U|4443
7O81|1|B5|C|4444
7O81|1|B5|U|4445
7O81|1|B5|A|4446
7O81|1|B5|A|4447
7O81|1|B5|G|4448

Current chains

Chain B5
28S rRNA

Nearby chains

Chain BH
60S ribosomal protein L9
Chain BO
Ribosomal protein L13a
Chain Bm
60S ribosomal protein L40

Coloring options:


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