HL_7O81_112

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

C(PSU)GAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

7O81|1|B5|G|4440

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O81_112 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.1754

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7O81|1|B5|C|4434
7O81|1|B5|PSU|4435
7O81|1|B5|G|4436
7O81|1|B5|A|4437
7O81|1|B5|A|4438
7O81|1|B5|C|4439
7O81|1|B5|G|4440
7O81|1|B5|C|4441
7O81|1|B5|C|4442
7O81|1|B5|U|4443
7O81|1|B5|C|4444
7O81|1|B5|U|4445
7O81|1|B5|A|4446
7O81|1|B5|A|4447
7O81|1|B5|G|4448

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BH

60S ribosomal protein L9

Chain BO

Ribosomal protein L13a

Chain Bm

60S ribosomal protein L40