HL_7O81_125
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGAAG(A2M)
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7O81_125 not in the Motif Atlas
- Homologous match to HL_8C3A_011
- Geometric discrepancy: 0.117
- The information below is about HL_8C3A_011
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
7O81|1|B5|U|393
7O81|1|B5|G|394
7O81|1|B5|A|395
7O81|1|B5|A|396
7O81|1|B5|G|397
7O81|1|B5|A2M|398
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BK
- Replicase polyprotein 1ab
- Chain BP
- uL22
Coloring options: