HL_7O81_129

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUCUCUU(PSU)

Length

9 nucleotides

Bulged bases

7O81|1|B5|C|2470, 7O81|1|B5|U|2474

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O81_129 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.3221

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7O81|1|B5|G|2467
7O81|1|B5|U|2468
7O81|1|B5|U|2469
7O81|1|B5|C|2470
7O81|1|B5|U|2471
7O81|1|B5|C|2472
7O81|1|B5|U|2473
7O81|1|B5|U|2474
7O81|1|B5|PSU|2475

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BR

60S ribosomal protein L19

Chain BU

Ribosomal protein eL22